Saturday, January 16, 2016

limma, model, contrast matrix, topTable

limma reference:
[31] Smyth, G. (2004). Linear models and empirical bayes methods for assessing dierential
expression in microarray experiments. Statistical Applications in Genetics and Molecular

Biology 3, Article 3.

[49] Yang, Y.H. and Speed, T.P. (2003). Design and analysis of comparative microarray experiments.
In T.P. Speed, editor, Statistical Analysis of Gene Expression Microarray Data,
pages 35-91. Chapman & Hall/CRC Press.

topTable output

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