Seattle Yeast Resource Center
Provided genomes, mass spec, RNA seq data. Description of the experimental conditions are not clear.
http://www.yeastrc.org/g2p/about.do
GenAge
Expression data from S. cerevisiae under serial stresses, including H2O2 time course
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15936
Yeast
fitness Giaever lab, 2002 Nature
http://www.nature.com/nature/journal/v418/n6896/extref/nature00935-s1.htm
http://genomics.lbl.gov/YeastFitnessData/websitefiles/cel_index.html
(The site provide .cel files, but I did not locate the fitness files?! How did He14Ibuprofen obtain their fitness values?).
yeast resources pages
http://yeast.uni-graz.at/index.php?item=research
http://www.yeastgenome.org/download-data/sequence
Yeast essential and non-essential genes
/data_download/literature_curation/phenotypes.tab #contain this information in an irregular way.
Winzeler99Science and yeast deletion database also provide these information (cited by Hwang, Lin, Chang, Mori, Juan, Huang, 2009 Molecular Biosystems, Predicting essential genes based on network and sequence analysis)
Yeast RLS and CLS data
Kaeberlein and Kennedy labs.
bipixe
http://downloads.yeastgenome.org/published_datasets/Myers_2004_PMID_16420673/README
http://www.yeastgenome.org/download-data/published-datasets
Yeast CV GFP from Alon's paper
http://www.ncbi.nlm.nih.gov/pubmed/?term=zakrzewska+robustness
http://www.yeastgenome.org/cache/genome-wide-analysis.html
CV of GEO expression data
Genetic network (Costanzo2009).
PPI
LOH screen by Gottschling lab
Phenotypic capacitance, The phenotypic capacitance was used directly from the Levy & Siegal study (S28) and captures variability across a range of morphological phenotypes upon deletion of each of
the non-essential genes
Yeast morphology Database
Princeton genomics
http://genomics-pubs.princeton.edu/
BYxRM
http://genomics-pubs.princeton.edu/YeastCross_BYxRM/data/BYxRM_PhenoData.txt
Predicted prions
http://www.utsouthwestern.edu/labs/halfmann/publications/
ChEMBL, chemical database
https://www.ebi.ac.uk/chembl/
- Hellenmyer 2008 science chemical screen
- Rugly 2006 JB, literacture curated PIN dataset (I did not find it in Biogrid publication download)
- Lipson 2009 NBT, single molecular sequencing on trancriptome, supplment table 2 provide stddev and mean that can be used for CV=stddev/mean.
- CV of microarray based gene expression
- Gasch 2000
- Genetic network, Costanzo 2010
- PPI
- Power06 CLS life span
- LevySegel08 phenotypic potential
- Yeast GFP CV data, Newman et al
- Supplementary information From the following article Quantification of the yeast transcriptome by single-molecule sequencing Doron Lipson, Tal Raz, Alix Kieu, Daniel R Jones, Eldar Giladi, Edward Thayer, John F Thompson, Stan Letovsky, Patrice Milos & M
Yeast human gene homologs
http://yeastmine.yeastgenome.org/yeastmine/bagDetails.do?scope=all&bagName=Human+genes+with+yeast+homologs
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