E coli genomics resources

Strains

CGSC
Coli Genetic Stock Center

E. coli Genetic Resources at Yale
CGSC, The Coli Genetic Stock Center

http://cgsc.biology.yale.edu/KeioList.php



E coli PPI

M. Arifuzzaman, M. Maeda, A. Itoh, K. Nishikata, C. Takita,

R. Saito, T. Ara, K. Nakahigashi, H. C. Huang, A. Hirai,

K. Tsuzuki, S. Nakamura, M. Altaf-Ul-Amin, T. Oshima,

T. Baba, N. Yamamoto, T. Kawamura, T. Ioka-Nakamichi,

M. Kitagawa, M. Tomita, S. Kanaya, C. Wada and H. Mori,

Large-scale identification of protein–protein interaction of escherichia

coli k-12, Genome Res., 2006, 16(5), 686–91.

Essential gene interactions
https://www.jstage.jst.go.jp/article/ggs/88/4/88_233/_article



E coli essential genes
http://www.shigen.nig.ac.jp/ecoli/pec/   Profiles of Escherichia coli chromosomes (PEC)
302 essential genes, 4400 nonessential genes
Used in Jordan02GR paper

303 essential genes in E coli K12, Ecogene
http://www.ecogene.org/old/topic.php?topic_id=5

295 essential genes in Ecowiki
http://ecoliwiki.net/colipedia/index.php/Essential_genes

Gerdes03JB, essential genes in E coli MG1655
http://jb.asm.org/content/185/19/5673.short
620 essential gene, 3126 non-essential genes


http://www.genome.wisc.edu/resources/essential.htm


Essential genome of Caulobacter crescentus
http://onlinelibrary.wiley.com/doi/10.1038/msb.2011.58/full

Homologs of B subtilis essential genes?

EcoK12 Expression data, GO
http://www.porteco.org/downloads/dataAccess/